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mtDNA Primate dataset.
Suchard MA, Weiss RE, Sinsheimer JS (2004) Testing a molecular clock without an outgroup: derivations of induced priors on branch length restrictions in a Bayesian framework, Systematic Biology, 52:48-54.

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SRY, DAX1 and SOX9 datasets.
Suchard MA, Weiss RE, Sinsheimer JS, Dorman KS, Patel M, McCabe ERB (2003) Evolutionary similarity among genes, Journal of the American Statistical Assocation, 98:653-662.

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HIV strain KAL153 genome dataset.
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS (2003) Inferring spatial phylogenetic variation along nucleotide sequences: a multiple change-point model, Journal of the American Statistical Association, 98:427-437.

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HIV strains RW022, VI557 and RF gag gene datasets.
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS (2002) Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage, Systematic Biology, 51:715-728.

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Multiple mtDNA gene and longitudinal HIV partition datasets.
Suchard MA, Kitchen CMR, Sinsheimer JS, Weiss RE (2003) Hierarchical phylogenetic models for analyzing multipartite sequence data, Systematic Biology, 52:649-664.